PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_55883_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 126aa    MW: 14173.3 Da    PI: 10.2829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_55883_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1761111255
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           y+GVr+++ +g+++AeIrdps   k  r++lg+++t  +Aa+a++ a+ k++g
  cra_locus_55883_iso_1_len_376_ver_3  61 NYRGVRRRP-WGKFAAEIRDPSR--KGSRIWLGTYDTDVDAARAYDFAAFKMRG 111
                                          59*******.**********854..34**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-2361120IPR016177DNA-binding domain
PROSITE profilePS5103224.69861119IPR001471AP2/ERF domain
PfamPF008476.3E-1361111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3161120IPR001471AP2/ERF domain
SMARTSM003801.2E-3661125IPR001471AP2/ERF domain
PRINTSPR003672.8E-136273IPR001471AP2/ERF domain
CDDcd000182.42E-2762119No hitNo description
PRINTSPR003672.8E-13101121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
NYEPNSPISR YFDIHADFSE FKINSTPIYS PNSDSSGGSN STTISSDSTS SNNNENKKKK  60
NYRGVRRRPW GKFAAEIRDP SRKGSRIWLG TYDTDVDAAR AYDFAAFKMR GRKAILNFPL  120
DAGKSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A7e-2958120264ATERF1
2gcc_A7e-2958120264ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365343.13e-60PREDICTED: ethylene-responsive transcription factor ERF106-like
SwissprotQ9LY054e-38EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLK4L9E91e-60K4L9E9_SOLTU; AP2 c3 (Fragment)
TrEMBLM1BB763e-60M1BB76_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000413288e-60(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165